Database of gene expression @ISBSIB @unil Find us here: Bsky: @bgee.org Mastodon: @bgeedb@genomic.social LinkedIn: linkedin.com/company/bgee/
Lausanne
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Bgee database retweeted
🙌 BioHackathon Europe 2024 was held in Barcelona, Spain 🇪🇸 with 180 in-person participants and over 140 online, hacking through 30 bioinformatics projects.
🎯 Accelerating scientific innovation in #bioinformatics! #BioHackEU24
Read the news 👇 loom.ly/ulfdSC8
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In this exciting new preprint, Warwick Vesztrocy et al use Bgee to show that "the most diverged orthologues display the greatest change in gene expression, thus suggesting that they have a greater functional divergence"
biorxiv.org/content/10.1101/…
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Left, phylogeny cartoon showing divergence between paralogs (symmetric: same branch lengths, asymmetric: different branch lengths for paralogs), and boxplots showing higher expression similarity for symmetric than assymetric paralog pairs.
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Bgee database retweeted
Thrilled to represent @ISBSIB at the AI-Bioscience Collaborative Summit in Washington DC, organized by @StateDept et al. Great to see a growing recognition of curated biodata’s critical role in AI breakthroughs, exemplified by resources like PDB & @uniprot enabling AlphaFold. 1/2
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Bgee is proud to contribute open gene expression data to Wikidata. Happy birthday @wikidata!
You can leverage this data directly through Wikidata, or find it under RNA expression pattern in the info box of every gene page in Wikipedia.
wikidata.org/wiki/Q21163221
ALT expression of human insulin gene in Wikidata, from Bgee
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Coming to #biocuration2025? Join our workshop scFAIR: FAIRification of single-cell data stowers.org/events/biocurati… @ISBSIB @biocurator @marc_rr @fred_bstn #scRNAseq #FAIR #biocuration #bgee #FAIRdata #FAIRification #scFAIR #SingleCellAnalysis sc-fair.org/
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Bgee database retweeted
gget bgee 🐝
What is my gene of interest called in other species? (In other words: give me all orthologs of my gene.)
@Bgeedb
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Do you know gget by the Pachter lab? You should! It now includes efficient querying of Bgee in Python. Get high quality curated gene expression data directly in Python or command line. #RNAseq #biocuration #Python #scRNAseq pachterlab.github.io/gget/en… @lpachter @ISBSIB @marc_rr
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This release includes the addition of a large number of bulk RNA-Seq libraries in Salmo salar (Atlantic salmon). We also now provide "physiological status", which holds information about the smoltification status of individuals which is especially relevant for Salmo salar.
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We also added the free text anatomical, developmental and cell type information provided by authors in addition to the standardized ontology terms. @ISBSIB
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We still have some seats available for the #SIB course on Gene expression made useful easily: tools and database of Bgee live-streamed on 31 May 2024
sib.swiss/training/course/20…
#biocuration #bioinformatics #RNAseq #SingleCell #GeneExpression #training
ift.tt/StOrCAp
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We are excited to announce a new training course on Bgee 🧬
Course: Gene Expression made Useful Easily: Tools and Database of Bgee
Date: Friday 31 May 2024
Taught by: the Bgee team (Frédéric Bastian and Marc Robinson-Rechavi)
Apply at: sib.swiss/training/course/20…
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Bgee database retweeted
📢 Gene expression made useful easily: tools and database of @Bgeedb
👉 Friday 31 May 2024
📍Streamed
Taught by @Bgeedb team (@fred_bstn & @marc_rr)
#bioinformatics #training @isbsib #RNAseq #singlecell #GeneExpression
🚨 Apply at: sib.swiss/training/course/20…
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The @MonarchInit in 2024: an analytic platform integrating phenotypes, genes and diseases across species academic.oup.com/nar/advance… with Bgee inside, as well as our homology annotations through @uberanat
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