genai-in-genomics.github.io Advancing generative AI in genomics for tangible impact by identifying barriers and frontiers. Join us at ICLR 2026!
Rio de Janeiro, Brasil
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Lastly, our sponsor @mithrilcompute made this workshop possible!
Some of us use their platform for high-performance computing and we love the experience!
Mithril is offering compute credits (1x $10,000 org, 2x$1,000 indiv)
Apply here by May 1st: forms.gle/BhtKsWRUcQiL3o856
#ICLR2026
This wraps up the 1st Workshop on Generative AI in Genomics (Gen²) @iclr_conf.
We had so many speakers we wanted to invite, yet couldn't fit into our schedule.
We'd like to acknowledge our organizers, advisors, and colleague, @SandeepKambham2, who helped us run the workshop!
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This wraps up the 1st Workshop on Generative AI in Genomics (Gen²) @iclr_conf.
We had so many speakers we wanted to invite, yet couldn't fit into our schedule.
We'd like to acknowledge our organizers, advisors, and colleague, @SandeepKambham2, who helped us run the workshop!
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We’ve had 57 submissions presented in our sessions, spanning:
🧬 Diffusion models for regulatory element design
🧪 Single-cell, epi- & metagenomic foundation models
🤖 AI agents & perturbation prediction
📍 Generative spatial transcriptomics
A huge thanks to all our presenters!
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Check out the accepted submissions here:
openreview.net/group?id=ICLR…
#ICLR2026, #AI4Bio, #AI4Science, #Genomics, #ComputationalBiology, #GenAI @iclr_conf
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Our last talk was by
@arkosiorek
on #AlphaGenome. They noted it's not a generative model :) Yet, as a SOTA model for unified regulatory variant effect prediction, it represented the most popular application area of our submissions: regulatory genomics.
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We knew this would surely be of interest to the community, and it was!
Here is a their Substack on #AlphaGenome, focusing on the biological aspects:
nitter.siddz.com/arkosiorek/status/2020…
Publication: nature.com/articles/s41586-0…
Want to understand AlphaGenome but don't have a PhD in Biology? 📉
I joined the team without a bio background, and we just published in @Nature. Here's a breakdown for CS/ML community I wish I had: akosiorek.substack.com/p/alp…
#AlphaGenome #AI #Bioinformatics #DeepMind
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Also, check out alphagenome-pytorch, an accessible and hackable port from the @pkoo562 and @anshulkundaje labs for integrating the model into native PyTorch pipelines and fine-tuning on custom datasets:
genomicsxai.github.io/blogs/…
and the thread: nitter.siddz.com/abuen_dia/status/20318…"
Thrilled to announce alphagenome-pytorch, an accurate, readable, and careful port of AlphaGenome's architecture and weights to PyTorch. Work with @gtcaa @m_kjellberg @chriswzou @tuxinming as part of the GenomicsxAI initiative between @anshulkundaje and @pkoo562 labs.
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We heard from @gokcen, who presented Nona, a masked modeling framework for functional genomics that unifies multiple modalities. Their talk was just as accessible and comprehensive as the model itself! Check our their preprint here: biorxiv.org/content/10.1101/…
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Next, we had @njwfish present "Generative Distribution Embeddings" presenting his work from:
(GDE): arxiv.org/abs/2505.18150
(Distribution-Conditioned Transport; DCT): arxiv.org/abs/2603.04736
@iclr_conf #ICLR2026 #AI4Bio #Genomics #Gen2Workshop
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We've kicked off our workshop with two stellar field-grounding talks with forward-looking vision from Sarah Teichmann @teichlab and Maria Brbic @mariabrbic. If you missed it, check out the recording on iclr.cc @iclr_conf #ICLR2026 #AI4Bio
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Our panel discussion with Smita Krishnaswamy, Adam Kosiorek @arkosiorek, Alex Tong @AlexanderTong7, Gabriele Corso @GabriCorso and Nic Fishman @njwfish, moderated by Arnaud Doucet @ArnaudDoucet1 is now starting!
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Our panel discussion with Smita Krishnaswamy, Adam Kosiorek @arkosiorek, Alex Tong @AlexanderTong7, Gabriele Corso @GabriCorso and Nic Fishman @njwfish, moderated by Arnaud Doucet @ArnaudDoucet1 is now starting!
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1 week to go until our inaugural Gen² workshop at #ICLR2026 on April 27! We’re excited to share our updated schedule: genai-in-genomics.github.io/…
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We’ll open with a plenary talk by Sarah Teichmann @teichlab, followed by invited keynotes from @mariabrbic, @njwfish, @gokcen, and @arkosiorek.
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A big thank you to sponsor @mlfoundry for the support. The compute credits deadline has been extended to May 1, 2026, AoE: forms.gle/UGCY16ub61fpgxnG6. Looking forward to seeing many of you at the workshop!
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We’re excited to highlight oral spotlight presentations by Prateek Anand, Prin Phunyaphibarn, and Qiyuan Liu, along with many exciting poster presentations. (4/5)
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We’re also excited to feature a panel discussion moderated by @ArnaudDoucet1. Please fill in our question collection form here: forms.gle/yTgG5baCPMNPHWXC8 (3/5)
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🚀Compute credit opportunity from our sponsor Mithril for the Gen² community: 1 org prize of $10K, 2 individual prizes of $1K. Preference for Gen² attendees, but open to all researchers. 🗓️Apply by Apr 21, 11:59 PM AoE: forms.gle/BhtKsWRUcQiL3o856
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