Marlon Stoeckius@m_stoeckius

Director RnD @10xgenomics. Formerly Technology Innovation Lab (@NYGCtech) at New York Genome Center. Tweets about Tech. Views my own.

 New York, NY
Joined April 2015
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Marlon Stoeckius retweeted
Jonathan Alles@JonaAlles
31 Oct 2024
🎉 The ReadStore Demo Is Now Live! 🎉 Explore ReadStore—your new tool for managing FASTQ files and NGS datasets 🧬! Ready to get started in just minutes on your PC or Linux server 🌐. Try it now! evo-byte.com/readstore-get-s…
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Seeking a talent with a robust computational biology background for a Junior Postdoc position. Ideal candidates will have experience in single-cell and spatial transcriptomics OR openness and eagerness to master new skills swiftly are crucial. If you're interested please DM me.
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Camilla Engblom@camillaengblom
7 Dec 2023
And Spatial VDJ is out! More to follow, but for now, joy and gratitude for the privilege to work with the wonderful @thrane_kim @Qirongliiin @Jeff_Mold @FrisenJonas @joalunatkthse and many more collaborators. @karolinskainst @scilifelab @KTHuniversity science.org/doi/10.1126/scie…

Spatial transcriptomics of B cell and T cell receptors reveals lymphocyte clonal dynamics

A spatial transcriptomics–based technology cocaptures B and T cell receptors within their anatomical niches in human tissue.

science.org
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Marlon Stoeckius retweeted
Max Delbrück Center@MDC_Berlin
27 Oct 2023
The #mdcBerlin|@BIMSB_MDC and our partners @NOVAunl celebrated the kick-off meeting of the NOVA Institute of Medical Systems Biology (NIMSB) with Dr. Julia Monar, German Ambassador to #Portugal. Calls for group leaders and tech platform leaders will be out soon – stay tuned!
Group photo (left to right): Dr. Julia Monar (German Ambassador to Portugal), Isabel Rocha (Vice-Rector, NOVA University Lisbon), Prof. Markus Landthaler (Group Leader "RNA Biology and Posttranscriptional Regulation Lab", MDC), Prof. Ana Pombo (Group Leader "Epigenetic Regulation and Chromatin Architecture Lab", MDC), Dr. Jutta Steinkötter (Head of the Scientific Infrastructure Department, MDC), Prof. António Jacinto (NOVA Medical School, NOVA University Lisbon), Prof. Nikolaus Rajewsky (Director of the Berlin Institute for Medical Systems Biology (BIMSB) of the MDC and Group Leader "Systems Biology of Gene Regulatory Elements Lab"), Prof. Holger Gerhardt (Deputy Director of the MDC and Group Leader "Integrative Vascular Biology Lab"), Dr. Stan Gorski (Science Strategy at the Berlin Institute for Medical Systems Biology (BIMSB) of the MDC), Dr. Ashley Sanders (Group Leader "Genome instability and somatic mosaicism Lab", MDC), and Prof. Hike Graßmann (Administrative Director, MDC).

ALT Group photo (left to right): Dr. Julia Monar (German Ambassador to Portugal), Isabel Rocha (Vice-Rector, NOVA University Lisbon), Prof. Markus Landthaler (Group Leader "RNA Biology and Posttranscriptional Regulation Lab", MDC), Prof. Ana Pombo (Group Leader "Epigenetic Regulation and Chromatin Architecture Lab", MDC), Dr. Jutta Steinkötter (Head of the Scientific Infrastructure Department, MDC), Prof. António Jacinto (NOVA Medical School, NOVA University Lisbon), Prof. Nikolaus Rajewsky (Director of the Berlin Institute for Medical Systems Biology (BIMSB) of the MDC and Group Leader "Systems Biology of Gene Regulatory Elements Lab"), Prof. Holger Gerhardt (Deputy Director of the MDC and Group Leader "Integrative Vascular Biology Lab"), Dr. Stan Gorski (Science Strategy at the Berlin Institute for Medical Systems Biology (BIMSB) of the MDC), Dr. Ashley Sanders (Group Leader "Genome instability and somatic mosaicism Lab", MDC), and Prof. Hike Graßmann (Administrative Director, MDC).

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Marlon Stoeckius retweeted
10x Genomics
@10xGenomics
29 Aug 2023
8 months since Xenium launched. Over 100 Xenium instruments shipped. And so many happy customers! 🤩 See what our early customers are saying about this milestone, then stay tuned—because we’re just getting started! bit.ly/3QXMduY
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🎉 Guess what just landed? More #spatial omic fun is here!!! @10xGenomics
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Exploiting old tricks for solid tissues! Simplifying single cell and spatial-Omics workflows. Compatible with all ⁦@10xGenomics⁩ applications. FixNCut: Single-cell genomics through reversible tissue fixation and dissociation biorxiv.org/content/10.1101/…

FixNCut: Single-cell genomics through reversible tissue fixation and dissociation

The use of single-cell technologies for clinical applications requires disconnecting sampling from downstream processing steps. Early sample preservation can further increase robustness and reprodu...

biorxiv.org
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Marlon Stoeckius retweeted
nature
@Nature
10 Jun 2023
Nature research paper: The illusion of moral decline go.nature.com/3MXZzDL
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Marlon Stoeckius retweeted
Laurie Garrett
@Laurie_Garrett
11 Jun 2023
The Northern Atlantic Ocean is heating up so rapidly that it is literally, nearly off the charts. Pay heed. This is well beyond record-breaking.
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Raymond Yip@rkhyip
26 May 2023
First #Xenium run! Perfect experiment to conclude the week and prepare next week with data analysis🤩
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Marlon Stoeckius retweeted
10x Genomics
@10xGenomics
17 May 2023
This morning, NanoString received a court-ordered injunction to stop selling CosMx instruments and reagents for RNA detection in Germany. We’re dedicated to ensuring your research continues. Learn more: 10xgen.com/41OTXkG (1/5)
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Marlon Stoeckius retweeted
Ben Humphreys@HumphreysLab
1 May 2023
Xenium has landed! @10xGenomics @GenomeInstitute
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A magical box has come to town…
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Raymond Yip@rkhyip
18 Apr 2023
Light out, action🔬Thanks @10xGenomics for the smooth installation! #xenium
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The 10x Flex kit has worked well for fixed cell and fixed tissue samples. How does it do with FFPE samples? It took a bit of trial and error, but we have new data to show how it’s performing and wanted to share what we learned.
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Marlon Stoeckius retweeted
Hannah Ritchie
@_HannahRitchie
16 Apr 2023
Share of electricity from coal (Germany vs. its W. European neighbours) 🇩🇪 Germany: 31% 🇳🇱 Netherlands: 13% 🇩🇰 Denmark: 11% 🇬🇷 Greece: 10% 🇮🇹 Italy: 8% 🇮🇪 Ireland: 7% 🇪🇸 Spain: 3% 🇬🇧 UK: 1.9% 🇫🇷 France: 1% 🇦🇹 Austria: 0.2% 🇵🇹 Portugal: 0.1% 🇧🇪🇳🇴🇸🇪 Belgium, Norway, Sweden: <0.1%
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Marlon Stoeckius retweeted
Raymond Yip@rkhyip
12 Apr 2023
Unboxing our Easter present 🐣 #xenium
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Marlon Stoeckius retweeted
Marek Bartosovic@marekbartosovic
20 Mar 2023
If you (like us) enjoy developing new single-cell/spatial technologies and applying them to the brain, join us ! bartosovic-lab.com/open-posi… There are currently 2 open postdoc positions. One focused on brain organoids and one computational. Apply now 👆

Open positions | Bartosovic lab

bartosovic-lab.com
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Marlon Stoeckius retweeted
ASHLEY BENHAM@ASHLEYBENHAM1
3 Mar 2023
Another Xenium has landed!!!! 10x Genomics solution for in situ analysis and beyond because the tissue isn’t destroyed! lnkd.in/g8wRXszX

Another Xenium has landed!!!! 10x Genomics solution for in situ analysis and beyond because the...

Another Xenium has landed!!!! 10x Genomics solution for in situ analysis and beyond because the tissue isn’t destroyed!

linkedin.com
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Completed our first Xenium experiment with a custom panel and it was a huge success!  Ran two slides with multiple regions selected based on histology and previous Visium data. Here are the highlights of our run including region selection and our first dive into the data.
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