scverse@scverse_team

Foundational tools for omics data (mostly in python) Join us at Bluesky: scverse.bsky.social

 site-packages
scverse.org
Joined August 2020
87 Photos and videos
We’re looking for a Community Manager to help shape and support the growing scverse ecosystem. Deadline January 10, 2026! More details here: jobs.helmholtz-muenchen.de/j…
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Our September 29th community meeting is cancelled. We will reconvene on November 10 after the scverse conference!
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We will have our next community meeting on Tue, September 15, 2026, 11AM CST/ 9AM PST ! Michel Tarnow and Hannah Winter are presenting DiagVI which is part of scvi-tools- DiagVI integrates unpaired multi-modal single-cell data! Zoom registration link in 🧵
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For more information, check out the following- DiagVI documentation - docs.scvi-tools.org/en/stabl… scvi-tools GitHub - github.com/scverse/scvi-tool… Zoom registration link for the meeting: scverse.zulipchat.com/#narro…
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We will have our next community meeting on Tue, September 15, 2026, 11AM CST/ 9AM PST ! Michel Tarnow and Hannah Winter are presenting DiagVI which is part of scvi-tools- DiagVI integrates unpaired multi-modal single-cell data! Zoom registration link in 🧵
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For more information, check out the following- DiagVI documentation - docs.scvi-tools.org/en/stabl… scvi-tools GitHub - github.com/scverse/scvi-tool… Zoom registration link for the meeting: scverse.zulipchat.com/#narro…
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We will have our first community meeting after summer break on Tue, September 1, 2026, 11AM CST/ 9AM PST ! Taobu Hu, will be presenting on Cell-GPS! Zoom registration link in 🧵
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For more information, check out the following- Preprint - biorxiv.org/content/10.64898… Cell-GPS docs - cell-gps.readthedocs.io/en/l… Zoom registration link for the meeting: scverse.zulipchat.com/#narro…
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We will have our first community meeting after summer break on Tue, September 1, 2026, 11AM CST/ 9AM PST ! Taobu Hu, will be presenting on Cell-GPS! Zoom registration link in 🧵
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For more information, check out the following- Preprint - biorxiv.org/content/10.64898… Cell-GPS docs - cell-gps.readthedocs.io/en/l… Zoom registration link for the meeting: scverse.zulipchat.com/#narro…
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Multi-omic trajectory inference from paired single-cell RNA-seq and ATAC-seq data? Meet ATLAS, our newest ecosystem package addition 🎉 💻 github.com/smilies-polito/at… 🔖 atlas-smilies.readthedocs.io… 📍@smiliespolito
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🚨  Last call for applications! The hackathon on MS-based single-cell proteomics is closing soon - this is your final chance to join us in Vienna. We’ll be closing applications very soon - don’t miss out Details in 🧵
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Reminder: This hackathon is focused on mass-spectrometry-based approaches (but open to anyone curious about MS-SCP ❤️ )
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📅  When: September 4-5th, 2026 🌆  Where: Vienna Biocenter ⏳  Application deadline: 1st July 2026 (AOE) 📬  Acceptance notifications: 15th July 2026 (AOE) 👉  Apply here: luma.com/pwzuldwr Learn more about the event here: scverse.org/sc-proteomics202…
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We will have our last community meeting before summer break on Tue, June 23, 2026, 11AM CST/ 9AM PST ! Ian Dirk Fichtner, will be presenting on ProteoPy: an AnnData-based framework for integrated proteomics analysis! Zoom registration link in 🧵
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For more information, check out the following- Preprint - biorxiv.org/content/10.64898… ProteoPy GitHub - github.com/UKHD-NP/proteopy ProteoPy docs - proteopy.readthedocs.io/en/l… Zoom registration link for the meeting: lnkd.in/dZpbKKsY
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We will have our last community meeting before summer break on Tue, June 23, 2026, 11AM CST/ 9AM PST ! Ian Dirk Fichtner, will be presenting on ProteoPy: an AnnData-based framework for integrated proteomics analysis! Zoom registration link in 🧵
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For more information, check out the following- Preprint - biorxiv.org/content/10.64898… ProteoPy GitHub - github.com/UKHD-NP/proteopy ProteoPy docs - proteopy.readthedocs.io/en/l… Zoom registration link for the meeting: lnkd.in/dZpbKKsY
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We will have our next community meeting on Tue, June 9, 2026, 11AM CST/ 9AM PST ! Marius Lange (@MariusLange8), will be presenting on CellMapper and CellAnnotator! Zoom registration link in 🧵
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For more information, check out their documentation- CellMapper: cellmapper.readthedocs.io/en… CellAnnotator: cell-annotator.readthedocs.i… Zoom registration link for the meeting: scverse.zulipchat.com/#narro…

CellMapper

Tests Coverage Pre-commit.ci PyPI Documentation Downloads Zenodo k-NN-based mapping of cells across representations to transfer labels, embeddings and expression values. Works for millions of cells...

cellmapper.readthedocs.io
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