Postdoc in Mo Khalil’s group at Boston University

Will Shaw retweeted
Retrotransposons can "hop" from a somatic cell into a germline cell, thus passing down to future generations. Before, it was thought that retrotransposons (which are basically stretches of DNA that generate copies of themselves through RNA, which gets converted back into DNA and pasted into the genome) would solely hop around within a single cell's genome. But it turns out that in flies, some retrotransposons encode a tiny protein called sORF2 that helps them get into another cell. The cells surrounding the egg encode these retrotransposons that get transcribed into RNA. Part of that RNA encodes sORF2, which the cell then makes. This protein forms some kind of interaction with the RNA, forming an extension or "protrusion" that pushes it into a neighboring cell, like the egg itself. The original retrotransposon DNA stays behind. For this paper, they watched these particles move into the egg, which is crazy. And when they disabled sORF2, the protrusions stopped forming and the transfer stopped. These retrotransposons are basically a miniature form of virus. Biology continues to get weirder.
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Genomes are not organised in ways that make complex biological processes easy to dissect. In this preprint, Anastasiya brings yeast cell-cycle genes together at one locus, then uses in vivo recombination to work towards a minimal gene set that sustains a functional cell cycle.
Our lab’s latest on synthetic genomics “Synthetic Combinatorial Minimisation of Cell Cycle Control” is up now on BioRxiv - covering ambitious yeast #synbio cell cycle work led by Anastasiya Malyshava and co-supervised by @UniOfSurrey’s Matteo Barberis.
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This focused application of SCRaMbLE (Synthetic Chromosome Rearrangement and Modification by LoxP-mediated Evolution) is a great example of how the technology can be used to explore vast combinatorial spaces to address fundamental biological questions.
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New preprint out 🌱 We present a new T-DNA vector system for Arabidopsis that supports clean, genomically mapped, single-copy T-DNA insertion with predictable cell-type/conditional gene expression. @MoKhalilLab + Gehring labs biorxiv.org/content/10.64898… 🧵1/16
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Beyond Arabidopsis, we believe this work establishes an important, outcome-focused framework for the rational, host-optimised design of next-generation T-DNA vectors, providing a foundation for more predictable and efficient plant transformation across diverse species. 15/16
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The paper has many more insights that I hope will help make plant transformation easier and more predictable. biorxiv.org/content/10.64898… And we’ll make the plasmids available through Addgene as ASAP! Huge thanks to everyone involved in @MoKhalilLab and Mary Gehring labs!! 16/16
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