Scientific formulae for the Homebrew and Linuxbrew package managers
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Brewsci retweeted
Big fan of the Gemmi toolkit for #xtallography (@ccp4_mx / GΦL), and its cif & mtz command-line tools.
Now also available via : π» `brew tap brewsci/bio; brew install gemmi`
π @MacHomebrew & @brew_sci
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π New formula biointerchange in Brewsci/bio for Linux and macOS!
βΉοΈ Genomic linked-data converter: an interchange GFF, GVF, VCF files via JSON-LD
πΊ brew install brewsci/bio/biointerchange
π‘ github.com/BioInterchange/Biβ¦
π¬ github.com/brewsci/homebrew-β¦
#bioinformatics
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π New formula krona in Brewsci/bio for Linux and macOS!
βΉοΈ Interactively explore metagenomes and more from a web browser
πΊ brew install brewsci/bio/krona
π‘ github.com/marbl/Krona/wiki
π doi.org/10.1186/1471-2105-12β¦
π¬ github.com/brewsci/homebrew-β¦
π§ brew.sh #bioinformatics
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Brewsci retweeted
Just added PAML 4.9j to Homebrew for macOS. To install it, you will need brewsci/bio: `brew tap brewsci/bio; brew install paml`. And the good news? It will automatically work on Mac ARM M1 architecture! @MacHomebrew @brew_sci
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π New formula clipper4coot in Brewsci/bio for Linux and macOS!
βΉοΈ Crystallographic automation and complex data manipulation libraries
πΊ brew install brewsci/bio/clipper4coot
π‘ mrc-lmb.cam.ac.uk/
π¬ github.com/brewsci/homebrew-β¦
π§ brew.sh #bioinformatics
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π New formula ssm in Brewsci/bio for Linux and macOS!
βΉοΈ Secondary-structure matching, tool for fast protein structure alignment
πΊ brew install brewsci/bio/ssm
π‘ mrc-lmb.cam.ac.uk
π doi.org/10.1107/S09074449040β¦
π¬ github.com/brewsci/homebrew-β¦
#bioinformatics
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π New formula libccp4 in Brewsci/bio for Linux and macOS!
βΉοΈ Protein X-ray crystallography toolkit
πΊ brew install brewsci/bio/libccp4
π‘ ccp4.ac.uk/
π¬ github.com/brewsci/homebrew-β¦
π§ brew.sh #bioinformatics
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π New formula mmdb2 in Brewsci/bio for Linux and macOS!
βΉοΈ C++ toolkit for working with macromolecular coordinate files
πΊ brew install brewsci/bio/mmdb2
π‘ mrc-lmb.cam.ac.uk/
π¬ github.com/brewsci/homebrew-β¦
π§ brew.sh #bioinformatics
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π New formula raster3d in Brewsci/bio for Linux and macOS!
βΉοΈ Set of tools for generating high quality raster images of proteins
πΊ brew install brewsci/bio/raster3d
π‘ bmsc.washington.edu/raster3d
π doi.org/10.1016/S0263-7855(9β¦
π¬ github.com/brewsci/homebrew-β¦
#bioinformatics
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π New formula faqcs in Brewsci/bio for Linux and macOS!
βΉοΈ Quality Control of Next Generation Sequencing Data
πΊ brew install brewsci/bio/faqcs
π‘ github.com/LANL-Bioinformatiβ¦
π doi.org/10.1186/s12859-014-0β¦
π¬ github.com/brewsci/homebrew-β¦
π§ brew.sh #bioinformatics
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π New formula falco in Brewsci/bio for Linux and macOS!
βΉοΈ C++ implementation of FastQC for quality control of sequencing data
πΊ brew install brewsci/bio/falco
π‘ github.com/smithlabcode/falcβ¦
π doi.org/10.12688/f1000researβ¦
π¬ github.com/brewsci/homebrew-β¦
#bioinformatics
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π New formula slim in Brewsci/bio for Linux and macOS!
βΉοΈ Forward simulator for population genetics and evolutionary biology
πΊ brew install brewsci/bio/slim
π‘ messerlab.org/slim/
π doi.org/10.1093/molbev/msy22β¦
π¬ github.com/brewsci/homebrew-β¦
#bioinformatics
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π New formula plink2 in Brewsci/bio for Linux and macOS!
βΉοΈ Analyze genotype and phenotype data
πΊ brew install brewsci/bio/plink2
π‘ cog-genomics.org/plink2
π doi.org/10.1186/s13742-015-0β¦
π¬ github.com/brewsci/homebrew-β¦
π§ brew.sh #bioinformatics
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π New formula jmol in Brewsci/bio for Linux and macOS!
βΉοΈ Open-source Java viewer for chemical structures in 3D
πΊ brew install brewsci/bio/jmol
π‘ jmol.sourceforge.io/
π¬ github.com/brewsci/homebrew-β¦
π§ brew.sh #bioinformatics
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Brewsci retweeted
Do you use Homebrew Python? You may not realize this, but Homebrew Python is not meant for you.
My latest article explains why, as well as what I think you should use instead when developing with #Python. π
justinmayer.com/posts/homebrβ¦
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Brewsci retweeted
Homebrew taps (3rd-party repositories) now support a GitHub Actions-based workflow hosting their bottles (binary packages) on GitHub Releases (rather than Bintray).
This should make it significantly easier to distribute macOS and/or Linux bottles.
brew.sh/2020/11/18/homebrew-β¦
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π New formula tmalign in Brewsci/bio for Linux and macOS!
βΉοΈ Protein structure alignment algorithm based on the TM-score
πΊ brew install brewsci/bio/tmalign
π‘ zhanglab.ccmb.med.umich.edu/β¦
π doi.org/10.1093/nar/gki524
π¬ github.com/brewsci/homebrew-β¦
brew.sh #bioinformatics
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π New formula mican in Brewsci/bio for Linux and macOS!
βΉοΈ Structure alignment algorithm that can handle Multiple-chain complexes
πΊ brew install brewsci/bio/mican
π‘ tbp.cse.nagoya-u.ac.jp/MICAN
π doi.org/10.1186/1471-2105-14β¦
π» brew.sh #bioinformatics
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π New formula percolator in Brewsci/bio for Linux and macOS!
βΉοΈ Semi-supervised learning for peptide identification from shotgun proteomics data
πΊ brew install brewsci/bio/percolator
π‘ percolator.ms
π doi.org/10.1038/nmeth1113
π»brew.sh #bioinformatics
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